Curriculum Vitae

João M. S. M. F. Carneiro

Data da última atualização »Last update : 19/08/2018


João Carneiro (h-index and h10-index of 11; 455 citations, total number of publications of 24, 2 thesis) is specialized in population genetic data, genetic databases, and programming languages (e.g. Python, Perl) applied to the study of biological processes. He finished his PhD thesis in Biology at University of Porto and The Institute of Molecular Pathology and Immunology of the University of Porto (IPATIMUP) in 2013. His thesis was related with molecular dynamics simulations of non-B DNA conformations. João Carneiro has received a 2014 FCT postdoctoral fellowship to study the influence of non-B DNA conformations in mtDNA rearrangements at CIIMAR (Interdisciplinary Centre of Marine and Environmental Research). Through the last four years João Carneiro was advisor of students in bioinformatics and software tools for biological data analysis (DNA sequences analysis, phylogenetic calculations, python programming, next generation sequencing data analysis, statistical analysis with SAS University and R language).


Endereço de acesso a este CV:

http://www.degois.pt/visualizador/curriculum.jsp?key=7632474699032048


Dados pessoais (Personal data)
Nome completo
Full name
João M. S. M. F. Carneiro
Nome em citações bibliográficas
Quoting name
Carneiro, João
Endereço profissional
Professional address
Universidade do Porto
Centro Interdisciplinar de Investigação Marinha e Ambiental
CIIMAR Terminal de Cruzeiros de Leixões. Av. General Norton de Matos s/n Matosinhos Portugal
Matosinhos
4450 Porto
Portugal
Telefone: (+351)223401800
Correio electrónico: joaomiguelsov@gmail.com
Homepage: https://www2.ciimar.up.pt
Sexo
Gender
Masculino»Male




Graus Académicos (Academic Degrees)
2013 Doutoramento
Phd
Biologia.
Universidade do Porto, Portugal.

2007-2008 Mestrado
Master degree
Genética forense (1 anos » years) .
Universidade do Porto, Portugal.

1999-2006 Licenciatura
Licentiate degree
Biologia (4 anos » years) .
Universidade do Porto, Portugal.





Línguas (Languages)
Compreende
Understandig
Português (Bem), Inglês (Bem).
Fala
Speaking
Português (Bem), Inglês (Razoavelmente).

Reading
Inglês (Bem).
Escreve
Writing
Português (Bem), Inglês (Razoavelmente).




Produção científica, técnica e artística/cultural (Scientific, technical and artistical/cultural production)
Artigos em revistas com arbitragem científica
Papers in periodics with scientific refereeing
1. Moreira, Filipa; Carneiro, João; Pereira, Filipe. 2017. "A proposal for standardization of transgenic reference sequences used in food forensics", Forensic Science International: Genetics 29, 29: e26 - e28.
2. Carneiro, J.; Resende, Adriana; Pereira, F.. 2017. "The HIV oligonucleotide database (HIVoligoDB)", Database 2017, 1: 1 - 5.
3. Carneiro, João; Pereira, Filipe. 2016. "EbolaID: An Online Database of Informative Genomic Regions for Ebola Identification and Treatment", PLOS Neglected Tropical Diseases 10, 7: e0004757 - e0.
4. Froufe, Elsa; Gan, Han M; Lee, Yin P; Carneiro, João; Varandas, Simone; Teixeira, Amílcar; Zieritz, Alexandra; Sousa, Ronaldo; Lopes-Lima, Manuel. 2015. " The male and female complete mitochondrial genome sequences of the Endangered freshwater mussel Potomida littoralis (Cuvier, 1798) (Bivalvia: Unionidae) ", Mitochondrial DNA Part A 27, 5: 3571 - 35.
5. Damas, Joana; Carneiro, João; Amorim, António; Pereira, Filipe. 2014. "MitoBreak: the mitochondrial DNA breakpoints database", Nucleic Acids Research 42, D1: D1261 - D1.
6. Damas, Joana; Samuels, David C; Carneiro, João; Amorim, António; Pereira, Filipe. 2014. "Mitochondrial DNA Rearrangements in Health and Disease-A Comprehensive Study", Human Mutation 35, 1: 1 - 14.
7. Carneiro, J.; Duarte-Pereira, Sara; Azevedo, Luísa; Castro, L. F. C; Aguiar, Paulo; Moreira, Irina S; Amorim, António; Silva, Raquel M; Dalby, Andrew R. 2013. "The Evolutionary Portrait of Metazoan NAD Salvage", PLoS ONE 8, 5: e64674 - e64674.
8. Teixeira-Silva, Ana; Silva, Raquel M; Carneiro, João; Amorim, António; Azevedo, Luísa; Batzer, Mark A. 2013. "The Role of Recombination in the Origin and Evolution of Alu Subfamilies", PLoS ONE 8, 6: e64884 - e64884.
9. Damas, Joana; Carneiro, Joao; Goncalves, Joana; Stewart, James B; Samuels, David C; Amorim, Antonio; Pereira, Filipe. 2012. "Mitochondrial DNA deletions are associated with non-B DNA conformations", Nucleic Acids Research 40, 16: 7606 - 76.
10. van Asch, B; Pereira, F.; Santos, L. S; Carneiro, J.; Santos, N.; Amorim, A.. 2012. "Mitochondrial lineages reveal intense gene flow between Iberian wild boars and South Iberian pig breeds", Animal Genetics 43, 1: 35 - 41.
11. Pereira, Vania; Gusmao, Leonor; Valente, Cristina; Pereira, Rui; Carneiro, Joao; Gomes, Iva; Morling, Niels; Amorim, Antonio; Prata, Maria J. 2012. "Refining the genetic portrait of Portuguese Roma through X-chromosomal markers", American Journal of Physical Anthropology 148, 3: 389 - 394.
12. Carneiro, João; Pereira, Filipe; Amorim, António. 2012. "SPInDel: a multifunctional workbench for species identification using insertion/deletion variants", Molecular Ecology Resources 12, 6: 1190 - 11.
13. Moleirinho, Ana; Carneiro, João; Matthiesen, Rune; Silva, Raquel M; Amorim, António; Azevedo, Luísa; Laudet, Vincent. 2011. "Gains, Losses and Changes of Function after Gene Duplication: Study of the Metallothionein Family", PLoS ONE 6, 4: e18487 - e1.
14. van Asch, B; Silva Santos, L; Carneiro, Joa~o; Pereira, Filipe; Amorim, Anto¿?nio. 2011. " Identification of mtDNA Lineages of Sus scrofa by Multiplex Single Base Extension for the Authentication of Processed Food Products ", Journal of Agricultural and Food Chemistry 59, 13: 6920 - 69.
15. van Asch, B; Pereira, Rui; Carneiro, João; Amorim, António. 2011. "Population assignment in seven Portuguese dog breeds and Iberian wolves", Forensic Science International: Genetics Supplement Series 3, 1: e556 - e5.
16. Pereira, Filipe; Carneiro, João; Matthiesen, Rune; van Asch, B; Pinto, Nádia; Gusmão, Leonor; Amorim, António. 2010. "Identification of species by multiplex analysis of variable-length sequences", Nucleic Acids Research (NAR) 38, 22: 1 - 17.
17. Carneiro, João. 2010. "A guide for mitochondrial DNA analysis in non-human forensic investigations", The Open Forensic Science Journal 2010, 3: 33 - 44.
18. Carneiro, João. 2010. "Microevolution in a natural population of Daphnia longispina exposed to acid mine drainage", 213 Interdisciplinary Studies on Environmental Chemistry — Biological Responses to Contaminants ,, 1: 213 - 218.
19. Azevedo, Luisa; Carneiro, Joao; van Asch, B; Moleirinho, Ana; Pereira, Filipe; Amorim, Antonio. 2009. "Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components", Bmc Genomics 10, 266: 1 - 12.
20. Pereira, Filipe; Carneiro, João; Soares, Pedro; Maciel, Sónia; Nejmeddine, Fouad; Lenstra, Johannes A; Gusmão, Leonor; Amorim, António. 2008. "A multiplex primer extension assay for the rapid identification of paternal lineages in domestic goat (Capra hircus): Laying the foundations for a detailed caprine Y chromosome phylogeny", Molecular Phylogenetics and Evolution, 49: 663 - 668.
21. Pereira, Filipe; Carneiro, João; Amorim, António. 2008. "Identification of species with DNA-based technology: current progress and challenges.", Recent Pat DNA Gene Seq 2, 3: 187 - 99.
22. Pereira, F.; Soares, P.; Carneiro, J.; Pereira, L.; Richards, M. B; Samuels, D. C; Amorim, A.. 2008. "Evidence for Variable Selective Pressures at a Large Secondary Structure of the Human Mitochondrial DNA Control Region", Molecular Biology and Evolution 25, 12: 2759 - 27.
23. Amorim, A.; Carneiro, J.. 2008. "The impact of silent alleles in kinship probability calculations", Forensic Science International: Genetics Supplement Series 1, 1: 638 - 639.

Trabalhos completos/resumidos em eventos sem arbitragem científica
Papers in conference proceedings without scientific refereeing
1. Carneiro, João. 2011. "Genetic diversity within the mitochondrial genome of Bursaphelenchus xylophilus", Trabalho apresentado em XLIII ONTA Meeting, Coimbra, Portugal, In XLIII ONTA Meeting, Coimbra, Portugal, Coimbra.

Outra produção científica
Other scientific production
1. Carneiro, João. 2013. "The Role of Non-coding DNA Structural Information in Phylogeny, Evolution and Disease". Porto: Universidade do Porto.



Apresentação oral de trabalho
Oral work presentation
1. Carneiro, João. Mitochondrial DNA evolutionary breakpoints are associated with non-B DNA conformations - João Carneiro, Matthias Bernt, Filipe Pereira,2018 (Outra).
2. Carneiro, João. Unravelling the role of non-B DNA conformations in mitochondrial genome rearrangements - João Carneiro, Matthias Bernt, Filipe Pereira ,2017 (Poster).








Indicadores de produção (Production indicators)

Total
Produção científica
Scientific production
25

Artigos científicos em revistas
Papers in periodics
23
Com arbitragem científica
With scientific refereeing
23
Trabalhos em eventos
Papers in conference proceedings
1
Sem arbitragem científica
Without scientific refereeing
1
Outros tipos de produção científica
Other scientific production
1

Total
Produção técnica
Technical production
2

Outros tipos de produção técnica
Other technical production
2


Visualizações do curriculum [ 947 ]
 
Página gerada pela Plataforma de Curricula DeGóis promovida pela FCT e pelo Gávea/DSI/UM em 19-11-2019 às 17:24:47
Plataforma de Curricula DeGóis: http://www.degois.pt | Icons by Axialis Team
Co-Autores Relacionados no DeGóis (1)
 Co-authors listed in Degóis